An RNA secondary structure workbench.

AUTOR(ES)

Martinez, H M

RESUMO

A multiple approach to the study of RNA secondary structure is described which provides for the independent drawing of structures using base-pairing lists, for the generation of local structures in the form of hairpins, and for the generation of global structures by both Monte Carlo and dynamic programming methodologies. User-adjustable parameters provide for limiting the size of hairpin loops, bulges and inner loops, and constraints can be imposed relative to position-dependent base pairing.

Documentos Relacionados

• RNAMotif, an RNA secondary structure definition and search algorithm
• Amount of RNA secondary structure required to induce an alternative splice.
• The secondary structure and sequence optimization of an RNA ligase ribozyme.
• Vienna RNA secondary structure server
• Prediction of RNA Secondary Structure